A framework for analyzing single-cell genomics data, in which geometrical properties are harnessed to obtain insights on cellular diversity, including precise clustering, clear visualizations, and ...

Note This implementation is no longer maintained. A new version in Jax is available in pertpy. For more information and contribution guidelines please visit the ...

We have uploaded gene embeddings from gpt4-o and drug embeddings from GPT 3.5 in our website, please check them if you wanna have a try! We reply on these packages ...

Single-cell RNA sequencing (scRNA-seq) has generated a rapidly expanding collection of public datasets that provide insight into development, disease, and therapy. However, researchers lack an ...

Single-cell technologies have revolutionized our ability to interrogate biological systems at unprecedented resolution, revealing complex cellular heterogeneity and dynamic processes that underlie ...

Layer 2/3 (L2/3) glutamatergic neurons are important sites of experience-dependent plasticity and learning in the mammalian cortex. Their properties vary continuously with cortical depth and depend ...